How to Set Up Accounting Software for Your Ad Agency


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When you run an advertising agency, your success depends on creativity, collaboration, and smart execution.

But behind the scenes, what really powers your agency’s growth is a financial system that works—efficiently and clearly.

That’s why choosing and setting up the right accounting software isn’t just a technical task—it’s a strategic move.

Whether you’re using QuickBooks Online, Xero, Zoho Books, or FreshBooks, setting things up the right way helps you stay profitable, track your campaigns, and scale your operations with confidence.

In this post, I will walk you through how to set up your accounting software for an ad agency.

Why Setup Matters More Than the Software You Choose

No matter how modern or well-reviewed your accounting tool is, it won’t help you unless it’s tailored to your agency’s actual needs.

The goal is to set up a system that supports:

  1. Project- or campaign-based accounting

  2. Retainer and Recurring Invoicing

  3. Contractor payments and 1099 tracking

  4. Profitability by client or service line

  5. Plays well with other software tools

Setting Up Accounting Software for Your Ad Agency

Step 1: Prepare Before You Start

Start with a clear picture of what you need your system to do.

Gather the following:

  • A list of active clients, retainers, and projects/campaigns

  • Client Contract Details (retainer, hourly, flat-fee)

  • A rough outline of your services and cost categories

Step 2: Customize Your Chart of Accounts

Your Chart of Accounts is the backbone of your system.

Make sure it reflects how your agency operates.

Revenue

  • Retainer Income

  • Project (Campaign Revenue)

  • Hourly Income (Consulting or Strategy Services)

  • Pass-Through Income (Expenses that client reimburses you for)

Cost of Goods Sold

  • Direct Labor

  • Ad Spend (Facebook, Google, etc.)

  • Contractors & Freelancers

  • Project Software & Tools

  • Media Production Costs

Operating Expenses

  • Salaries, Wages, and Benefits

  • Subscriptions

  • Project Management Tools

  • Office & Administrative Expenses

  • Marketing, Events, & Client Gifts

  • Professional Services

Step 3: Enable Project or Job Tracking

If your platform supports it (most do), enable project/job tracking so you can:

  • Track revenue and expenses per client or campaign

  • Analyze profitability by job or retainer

  • Assign time or expenses directly to the work that generated them

Pro Tip: Depending on the platform, this can be called Projects, Jobs, or Tracking Categories. The name doesn’t matter—use them to see which campaigns are profitable.

Step 4: Automate Recurring Revenue

If you bill clients monthly (as many agencies do), make sure to set up:

  • Recurring invoices

  • Payment reminders

  • Email Delivery

This reduces admin work and keeps income flowing without chasing clients.

Step 5: Integrate Your Tech Stack

Your accounting software should play well with other tools.

Consider integrating your accounting software with a dedicated app for:

  1. Time Tracking

  2. Payroll & Contractors

  3. Expense Reporting & Management

  4. Customer Relationship Management

  5. Bill Payment Processing

  6. Financial Analytics

This creates a seamless system where data flows automatically—saving you hours and reducing errors.

Step 6: Build Custom Reports (and Go Beyond)

Most platforms offer standard reporting (P&L, balance sheet)

These are great for getting a snapshot of your financials—but if you want to go deeper that’s where QBO really shines: its ability to connect with best-in-class FP&A tools.

Tools like Syft Analytics, Fathom, Reach Reporting, and Jirav plug into your accounting software and transform your data into:

  • Visual dashboards for client performance

  • Forecasting tools for future cash flow and hiring plans

  • Custom board-ready reports with charts and KPIs

  • Budget vs. actual comparisons across campaigns or departments

These integrations are especially valuable for ad agencies managing multiple retainers, seasonal campaigns, or planning to scale.

Common Mistakes to Avoid

Even the best software won't help if it's poorly set up. Here are common missteps:

❌ Don’t Use Default Settings

Customize your chart of accounts, tracking categories, and workflows for your agency’s needs.

❌ Not Fully Utilizing Integration Capabilities

Manual entry wastes time. Connect time tracking, payroll, and receipt tools wherever possible.

❌ Skipping Project or Campaign Tracking

Without this, you won’t know what’s profitable and what’s draining your resources.

❌ Not Reviewing Reports Regularly

Set a monthly date to review key financials. Make decisions from data, not guesswork.

Download Your Free Accounting Software Setup Checklist

Setting up ad agency accounting software doesn’t have to be overwhelming.

👉 Download the Accounting Software Setup Checklist for Ad Agencies

Laptop with financial software program on the screen

Final Thoughts

Accounting might not be the glamorous side of agency life, but it’s what keeps the lights on and the creative flowing.

By choosing the right tools and setting them up well, you gain the financial clarity to scale with confidence.

Your software should work as hard as you do.

Set it up right—and let it power your agency’s growth.


The Accountant’s Palette helps creative business owners implement the right financial systems—from QuickBooks setup to monthly reporting and strategic forecasting.

Miller Wallace, CPA

Miller is a licensed CPA and the founder of The Accountant’s Palette, a virtual accounting firm providing accounting, bookkeeping, and CFO services to small businesses.

http://www.accountantspalette.com
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